Package: phylter Title: Detect and Remove Outliers in Phylogenomics Datasets Version: 0.9.12 Imports: ape, ggplot2, reshape2, Rfast, RSpectra, stats, utils Suggests: knitr, rmarkdown LinkingTo: RcppEigen (>= 0.3.2.9.0), Rcpp (>= 0.12.6), RcppArmadillo (>= 0.7.600.1.0) Authors@R: c( person("Damien M.", "de Vienne", role = "aut", email = "damien.de-vienne@univ-lyon1.fr", comment = c(ORCID = "0000-0001-9532-5251")), person("Stéphane", "Dray", role = "aut", email = "stephane.dray@univ-lyon1.fr", comment = c(ORCID = "0000-0003-0153-1105")), person("Théo", "Tricou", role = "aut", email = "treecou.theo@gmail.com", comment = c(ORCID = "0000-0002-4432-2680")), person("Aurélie", "Siberchicot", role = c("ctb", "cre"), email = "aurelie.siberchicot@univ-lyon1.fr", comment = c(ORCID = "0000-0002-7638-8318")) ) License: GPL (>= 2) Description: Analyzis and filtering of phylogenomics datasets. It takes an input either a collection of gene trees (then transformed to matrices) or directly a collection of gene matrices and performs an iterative process to identify what species in what genes are outliers, and whose elimination significantly improves the concordance between the input matrices. The methods builds upon the Distatis approach (Abdi et al. (2005) ), a generalization of classical multidimensional scaling to multiple distance matrices. LazyData: true Depends: R (>= 4.0) BugReports: https://github.com/damiendevienne/phylter/issues URL: https://github.com/damiendevienne/phylter Encoding: UTF-8 RoxygenNote: 7.3.2 VignetteBuilder: knitr Config/pak/sysreqs: make libicu-dev Repository: https://damiendevienne.r-universe.dev Date/Publication: 2025-12-14 12:55:52 UTC RemoteUrl: https://github.com/damiendevienne/phylter RemoteRef: HEAD RemoteSha: 4d74241169be3882da9d5f08da47bd40604764eb NeedsCompilation: yes Packaged: 2026-07-13 09:39:29 UTC; root Author: Damien M. de Vienne [aut] (ORCID: ), Stéphane Dray [aut] (ORCID: ), Théo Tricou [aut] (ORCID: ), Aurélie Siberchicot [ctb, cre] (ORCID: ) Maintainer: Aurélie Siberchicot